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Zachos, F. Species splitting puts conservation at risk. Nature 494, 35 (2013). https://doi.org/10.1038/494035c
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DOI: https://doi.org/10.1038/494035c

Yael Visser
Threatened species are usually managed in a manner to protect the evolutionary significance of a group. Any group that is deemed a phylogenetic species would most likely already be managed as a separate group. Splitting species does not harm conversation efforts. It just puts species classification and management programs on the same footing.
Peter Uetz
It's not exactly true that "phylogenetic species would most likely already be managed as a separate group". Just take a look at the IUCN Red List. For instance, only a fraction of all reptiles are covered by the Red List and many of them are data deficient. At the same time, lots of reptile species get split up, so that conservation is lagging way behind the taxonomy. Also, lots of them get split up because of some "genetic" differences without any evidence that they are really reproductively isolated. It's easy to define "phylogenetic" species based on a bunch of sequences, but how would you protect such species? You cannot sequence each specimen in order to determine whether it's worth protecting.