A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

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et al. 2019

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…Because CATSPER1, − 4, and -G are present in ratites, their absence in zebra finch and chicken appears to reflect loss in Neognaths. Our conclusions are partially consistent with Cai et al [72], Chung et al [70], and Warren et al [41], but due to the higher quality PacBio scaffolds and examination of additional birds, we provide stronger evidence with regards to truncation and phylogenetic patterns of gene loss. We note that the chicken gene annotated as CATSPER2 in NCBI (Gene ID: 395985) is misannotated – the correct annotation is CACNA1S.…”

Section: Results

supporting

confidence: 92%

Exploring the molecular basis of neuronal excitability in a vocal learner

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²

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³

et al. 2019

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…Because CATSPER1, − 4, and -G are present in ratites, their absence in zebra finch and chicken appears to reflect loss in Neognaths. Our conclusions are partially consistent with Cai et al [72], Chung et al [70], and Warren et al [41], but due to the higher quality PacBio scaffolds and examination of additional birds, we provide stronger evidence with regards to truncation and phylogenetic patterns of gene loss. We note that the chicken gene annotated as CATSPER2 in NCBI (Gene ID: 395985) is misannotated – the correct annotation is CACNA1S.…”

Section: Results

supporting

confidence: 92%

Temporal Loss of Genome‐Wide and Immunogenetic Diversity in a Near‐Extinct Parrot

Silver

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Farquharson

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Peel

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et al. 2025

Molecular Ecology

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…These values were similar to those identified in the chicken ( Gallus gallus ) (Warren et al. 2017 ). The global transcriptome contained 91.5% complete BUSCOs, and the protein genome annotation contained 83.5% complete BUSCOs (Table S6 ).…”

Section: Results

supporting

confidence: 90%

False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

Lee

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,

Ko

²

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Yoo

³

et al. 2022

Genome Biol

Self Cite

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…However, we found these two genes on the newly discovered and assembled chromosome 36 of the VGP zebra finch assembly (Fig. 7 d), consistent with findings in chicken that used long reads [ 39 ]. We found that only a single small 2269 bp contig (NW_002223730.1) contained one of the twenty-nine exons of IPO4 in the previous zebra finch assembly.…”

Section: Results

supporting

confidence: 88%

Exploring the molecular basis of neuronal excitability in a vocal learner

¹

,

²

,

³

et al. 2019

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…Because CATSPER1, − 4, and -G are present in ratites, their absence in zebra finch and chicken appears to reflect loss in Neognaths. Our conclusions are partially consistent with Cai et al [72], Chung et al [70], and Warren et al [41], but due to the higher quality PacBio scaffolds and examination of additional birds, we provide stronger evidence with regards to truncation and phylogenetic patterns of gene loss. We note that the chicken gene annotated as CATSPER2 in NCBI (Gene ID: 395985) is misannotated – the correct annotation is CACNA1S.…”

Section: Results

supporting

confidence: 92%

Temporal Loss of Genome‐Wide and Immunogenetic Diversity in a Near‐Extinct Parrot

Silver

¹

,

Farquharson

²

,

Peel

³

et al. 2025

Molecular Ecology

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…These values were similar to those identified in the chicken ( Gallus gallus ) (Warren et al. 2017 ). The global transcriptome contained 91.5% complete BUSCOs, and the protein genome annotation contained 83.5% complete BUSCOs (Table S6 ).…”

Section: Results

supporting

confidence: 90%

False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

Lee

¹

,

Ko

²

,

Yoo

³

et al. 2022

Genome Biol

Self Cite

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…However, we found these two genes on the newly discovered and assembled chromosome 36 of the VGP zebra finch assembly (Fig. 7 d), consistent with findings in chicken that used long reads [ 39 ]. We found that only a single small 2269 bp contig (NW_002223730.1) contained one of the twenty-nine exons of IPO4 in the previous zebra finch assembly.…”

Section: Results

supporting

confidence: 88%

Exploring the molecular basis of neuronal excitability in a vocal learner

¹

,

²

,

³

et al. 2019

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…Because CATSPER1, − 4, and -G are present in ratites, their absence in zebra finch and chicken appears to reflect loss in Neognaths. Our conclusions are partially consistent with Cai et al [72], Chung et al [70], and Warren et al [41], but due to the higher quality PacBio scaffolds and examination of additional birds, we provide stronger evidence with regards to truncation and phylogenetic patterns of gene loss. We note that the chicken gene annotated as CATSPER2 in NCBI (Gene ID: 395985) is misannotated – the correct annotation is CACNA1S.…”

Section: Results

supporting

confidence: 92%

Temporal Loss of Genome‐Wide and Immunogenetic Diversity in a Near‐Extinct Parrot

Silver

¹

,

Farquharson

²

,

Peel

³

et al. 2025

Molecular Ecology

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…These values were similar to those identified in the chicken ( Gallus gallus ) (Warren et al. 2017 ). The global transcriptome contained 91.5% complete BUSCOs, and the protein genome annotation contained 83.5% complete BUSCOs (Table S6 ).…”

Section: Results

supporting

confidence: 90%

False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

Lee

¹

,

Ko

²

,

Yoo

³

et al. 2022

Genome Biol

Self Cite

Abstract

Smart CitationsHow this paper cites the one you are viewing

“…However, we found these two genes on the newly discovered and assembled chromosome 36 of the VGP zebra finch assembly (Fig. 7 d), consistent with findings in chicken that used long reads [ 39 ]. We found that only a single small 2269 bp contig (NW_002223730.1) contained one of the twenty-nine exons of IPO4 in the previous zebra finch assembly.…”

Section: Results

supporting

confidence: 88%