{"id":"https://openalex.org/W2034861886","doi":"https://doi.org/10.1093/bioinformatics/bth943","title":"Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens","display_name":"Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens","publication_year":2004,"publication_date":"2004-07-19","ids":{"openalex":"https://openalex.org/W2034861886","doi":"https://doi.org/10.1093/bioinformatics/bth943","mag":"2034861886","pmid":"https://pubmed.ncbi.nlm.nih.gov/15262812"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth943","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth943","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112448069","display_name":"K.N. Srinivasan","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2802946424","display_name":"Johns Hopkins University Applied Physics Laboratory","ror":"https://ror.org/029pp9z10","country_code":"US","type":"facility","lineage":["https://openalex.org/I145311948","https://openalex.org/I2802946424"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K.N. Srinivasan","raw_affiliation_strings":["Division of Biomedical Sciences, Johns Hopkins Medicine in Singapore, The Gemini, Singapore","Division of Biomedical Sciences, Johns Hopkins Medicine in Singapore, 41-Science Park Road, Lobby C, The Gemini, Singapore 117610,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Sciences, Johns Hopkins Medicine in Singapore, The Gemini, Singapore","institution_ids":["https://openalex.org/I2802946424"]},{"raw_affiliation_string":"Division of Biomedical Sciences, Johns Hopkins Medicine in Singapore, 41-Science Park Road, Lobby C, The Gemini, Singapore 117610,#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024955380","display_name":"G.L. Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"G.L. Zhang","raw_affiliation_strings":["Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067724472","display_name":"Asif M. Khan","orcid":"https://orcid.org/0000-0001-9202-279X"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"A.M. Khan","raw_affiliation_strings":["Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111431197","display_name":"J. Thomas August","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J.T. August","raw_affiliation_strings":["Division of Biomedical Sciences, Johns Hopkins Medicine in Singapore, 41-Science Park Road, Lobby C, The Gemini, Singapore 117610,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Sciences, Johns Hopkins Medicine in Singapore, 41-Science Park Road, Lobby C, The Gemini, Singapore 117610,#TAB#","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089063979","display_name":"Vladimir Brusi\u0107","orcid":"https://orcid.org/0000-0003-0523-5266"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"V. Brusic","raw_affiliation_strings":["Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613","institution_ids":["https://openalex.org/I3005327000"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5112448069"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2802946424"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6109,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.89638105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"20","issue":"suppl_1","first_page":"i297","last_page":"i302"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.7978296875953674},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.6594207882881165},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5635161399841309},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4394102096557617},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4378148317337036},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38403040170669556},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.38154739141464233},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.33072805404663086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21721377968788147}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.7978296875953674},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.6594207882881165},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5635161399841309},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4394102096557617},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4378148317337036},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38403040170669556},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.38154739141464233},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.33072805404663086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21721377968788147}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009856","descriptor_name":"Oncogene Proteins, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009856","descriptor_name":"Oncogene Proteins, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009856","descriptor_name":"Oncogene Proteins, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D050725","descriptor_name":"Papillomavirus E7 Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D050725","descriptor_name":"Papillomavirus E7 Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D050725","descriptor_name":"Papillomavirus E7 Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bth943","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth943","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15262812","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15262812","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:6068325","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7110022","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/107694","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/107694","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/131625","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/131625","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7900000214576721}],"awards":[{"id":"https://openalex.org/G1457133460","display_name":null,"funder_award_id":"U19 AI56541","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4095567043","display_name":null,"funder_award_id":"R37 AI 41908","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320320698","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1482905954","https://openalex.org/W1490155859","https://openalex.org/W1509190187","https://openalex.org/W1607996760","https://openalex.org/W1965435557","https://openalex.org/W1966118161","https://openalex.org/W1967669339","https://openalex.org/W1971101243","https://openalex.org/W1979821607","https://openalex.org/W1980795210","https://openalex.org/W2012385803","https://openalex.org/W2022126065","https://openalex.org/W2046086472","https://openalex.org/W2059853480","https://openalex.org/W2079542677","https://openalex.org/W2081400647","https://openalex.org/W2082005751","https://openalex.org/W2084748813","https://openalex.org/W2087437737","https://openalex.org/W2099485004","https://openalex.org/W2100433256","https://openalex.org/W2116586125","https://openalex.org/W2118276840","https://openalex.org/W2124097265","https://openalex.org/W2137339316","https://openalex.org/W2140734584","https://openalex.org/W2144166466","https://openalex.org/W2149350146","https://openalex.org/W2153117483","https://openalex.org/W2153268005","https://openalex.org/W2163595857","https://openalex.org/W2163627712","https://openalex.org/W2165246093","https://openalex.org/W2166630161","https://openalex.org/W2166831581","https://openalex.org/W2169198329","https://openalex.org/W2329334730","https://openalex.org/W2386336015"],"related_works":["https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W1978626146","https://openalex.org/W2205639271"],"abstract_inverted_index":{"MOTIVATION:":[0],"Processing":[1],"and":[2,24,85,99,114,119,168,183,200,230],"presentation":[3],"of":[4,27,75,129,142,150,180,196,208,216,236],"major":[5],"histocompatibility":[6],"complex":[7],"class":[8,58,77,105,135],"I":[9,59,78,106,136],"antigens":[10],"to":[11,190],"cytotoxic":[12],"T-lymphocytes":[13],"is":[14,139],"crucial":[15],"for":[16,72,127,133,194,203,214],"immune":[17],"surveillance":[18],"against":[19,157],"intracellular":[20],"bacteria,":[21],"parasites,":[22],"viruses":[23],"tumors.":[25],"Identification":[26],"antigenic":[28,54,61],"regions":[29],"on":[30],"pathogen":[31],"proteins":[32,113,117,163,181],"will":[33],"play":[34],"a":[35,45,69,124,148],"pivotal":[36],"role":[37],"in":[38,220,234],"designer":[39],"vaccine":[40],"immunotherapy.":[41],"We":[42,121],"have":[43,122],"developed":[44,123],"system":[46,71],"that":[47,165,186],"not":[48],"only":[49],"identifies":[50],"high":[51,176],"binding":[52],"T-cell":[53,60,107,173,218],"epitopes,":[55],"but":[56],"also":[57],"clusters":[62],"termed":[63],"immunological":[64,130],"hot":[65,131,198,232],"spots.":[66],"METHODS:":[67],"MULTIPRED,":[68],"computational":[70],"promiscuous":[73,217],"prediction":[74,195,215],"HLA":[76,104,134],"binders,":[79],"uses":[80],"artificial":[81],"neural":[82],"networks":[83],"(ANN)":[84],"hidden":[86],"Markov":[87],"models":[88,94,170,188,202],"(HMM)":[89],"as":[90],"predictive":[91],"engines.":[92],"The":[93,178],"were":[95],"rigorously":[96],"trained,":[97],"tested":[98],"validated":[100],"using":[101],"experimentally":[102],"identified":[103],"epitopes":[108,174,219],"from":[109,160],"human":[110,115],"melanoma":[111],"related":[112],"papillomavirus":[116],"E6":[118,182],"E7.":[120],"scoring":[125],"scheme":[126],"identification":[128],"spots":[132,199,233],"molecules,":[137],"which":[138],"the":[140,143],"sum":[141],"highest":[144],"four":[145,161,222],"predictions":[146,156],"within":[147],"window":[149],"30":[151],"amino":[152],"acids.":[153],"RESULTS:":[154],"Our":[155],"experimental":[158],"data":[159],"melanoma-related":[162],"showed":[164,185],"MULTIPRED":[166,213,227],"ANN":[167,187],"HMM":[169,201],"could":[171],"predict":[172],"with":[175],"accuracy.":[177],"analysis":[179],"E7":[184],"appear":[189],"be":[191],"more":[192],"accurate":[193],"HLA-A3":[197,231],"HLA-A2":[204,229],"predictions.":[205],"For":[206],"illustration":[207],"its":[209],"utility":[210],"we":[211],"applied":[212],"all":[221],"SARS":[223],"coronavirus":[224],"structural":[225],"proteins.":[226,238],"predicted":[228],"each":[235],"these":[237]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
